rs32984275 SNP Detail

Summary

• ID
  rs32984275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:123827370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGC TAGAGCAGGA ACAACCGCCT
  Y
  AGCCTCATCT TTGCATAACT GTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46219499	mCV23468036	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T
ss50631671	NES14029328	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	T	T		C	T	T	C		C
ss145824460	ENSMUSSNP6101006	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss322854275	CHEV_8_125624531	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32984275					SNP	C	C	C	C	C	C	C	T	C	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50631671	NES14029328	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123827370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21239	CpG island 21239	1503 bp proximal
Rpl13	ribosomal protein L13	1719 bp upstream
Rr382749	regulatory region 382749	within coordinates
Rr672353	regulatory region 672353	within coordinates
Rr672354	regulatory region 672354	810 bp proximal
Rr672355	regulatory region 672355	1229 bp proximal
Tssr79911	transcription start site region 79911	1713 bp upstream
Tssr79912	transcription start site region 79912	1728 bp upstream
Tssr79913	transcription start site region 79913	1800 bp upstream
Tssr83335	transcription start site region 83335	1629 bp downstream