rs32985643 SNP Detail

Summary

• ID
  rs32985643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117694476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAGCGGGA CTACAGTAGT ATAGTTCTCA GGATATAGAA
  GAACCACACG TCTGCCCTGG CAGACCTCTC CAGACAGAGG GGGTGGACAG AAGCCAGCAT
  Y
  TTGCATATAT TGCATTCTTG AAGGGTACCA TGGAAGGGTC GACTGCAGAA GGAGGAGGAA
  GGCTTCATGA AGATAATGGC ATGGGGTCTG GTTTTGATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45722168	mCV24296828	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss147294747	ENSMUSSNP4588057	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32985643					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117694476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14668	CpG island 14668	524 bp distal
Gm17114	predicted gene 17114	within coordinates
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	within coordinates
Tssr38632	transcription start site region 38632	1978 bp downstream
Tssr38633	transcription start site region 38633	1946 bp downstream
Tssr38634	transcription start site region 38634	1930 bp downstream
Tssr38635	transcription start site region 38635	1851 bp downstream
Tssr42994	transcription start site region 42994	1432 bp upstream