rs32988053 SNP Detail

Summary

• ID
  rs32988053
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:92419669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATAAAG AGATTAAAAT
  GTGAGCACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC TGCATCTACA
  TGCAGGTTGC AAAGGCAAAG GCCCTGGTGC AGAGTAGAAT ACAAACACTC TAATAAATCC
  CTAAGGAGAA TTCAATTGAC AGCTGTCTAC TAGACCTAGA AACCATGACT CTCTCAGCCT
  M
  CTTCACAAGG AAAACTATAA CCTATGCACT TTTTTTATCA TTTATATATT ATTTCCTCAA
  AGTCAATATG AGAAAGAAAA GGACTTCCTG GCTTATTCCA TAGATGTCAC ACCTGCATTA
  GAAGCACTAA GCATTTCAGT TAACCACATC AAAACTTCTC CCTCTGCTGG AGGAAGGGAG
  AAAAACTTAG GCTTTTCCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46756779	NES10742068	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32988053					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46756779	NES10742068	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:92419669 () rs orientation: forward

Symbol	Name	Function Class
Rr69137	regulatory region 69137	1069 bp distal
Rr69138	regulatory region 69138	within coordinates
Rr76692	regulatory region 76692	1186 bp distal
Rr76693	regulatory region 76693	98 bp proximal
Rr76694	regulatory region 76694	1107 bp proximal