rs32990443 SNP Detail

Summary

• ID
  rs32990443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3073649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG CGGGAACGGC GCGGGGGGGG
  R
  AAAGCAGAGA CAGGAACCTG GGGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45222839	mCV23826163	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss131630083	ENSMUSSNP1223438	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs32990443					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3073649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	within coordinates
Gm74511	predicted gene, 74511	within coordinates
Rr369110	regulatory region 369110	172 bp upstream
Rr441449	regulatory region 441449	905 bp distal
Rr441450	regulatory region 441450	within coordinates
Rr441451	regulatory region 441451	302 bp distal
Rr441452	regulatory region 441452	143 bp distal
Rr441453	regulatory region 441453	383 bp proximal
Rr441454	regulatory region 441454	775 bp proximal
Rr441455	regulatory region 441455	998 bp proximal
Rr441456	regulatory region 441456	1814 bp proximal
Tssr100004	transcription start site region 100004	350 bp upstream
Tssr100005	transcription start site region 100005	394 bp upstream
Tssr106442	transcription start site region 106442	256 bp downstream