rs32990564 SNP Detail

Summary

• ID
  rs32990564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164752920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAC TGAGCATCGG ACTAGATGGG
  R
  CGGGGTTTCC TGGAAAGGGA ACCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45222615	mCV23132985	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss148232904	ENSMUSSNP4758362	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320607082	CHEV_2_164736500	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32990564					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164752920 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2210414I22Rik	RIKEN cDNA 2210414I22 gene			890 bp upstream
Cpgi12677	CpG island 12677			within coordinates
Rr367365	regulatory region 367365			within coordinates
Rr569758	regulatory region 569758			1334 bp distal
Rr569759	regulatory region 569759			1226 bp distal
Rr569760	regulatory region 569760			884 bp distal
Rr569761	regulatory region 569761			within coordinates
Rr569762	regulatory region 569762			328 bp proximal
Rr569763	regulatory region 569763			395 bp proximal
Rr569764	regulatory region 569764			709 bp proximal
Rr569765	regulatory region 569765			747 bp proximal
Rr569766	regulatory region 569766			897 bp proximal
Tssr21686	transcription start site region 21686			427 bp upstream
Tssr27593	transcription start site region 27593			175 bp downstream
Tssr27594	transcription start site region 27594			218 bp downstream
Tssr27595	transcription start site region 27595			258 bp downstream
Tssr27596	transcription start site region 27596			560 bp downstream
Tssr27597	transcription start site region 27597			586 bp downstream
Zfp335	zinc finger protein 335			Intron
				mRNA-UTR
Zfp335os	zinc finger protein 335, opposite strand			433 bp upstream