rs32990853 SNP Detail

Summary

• ID
  rs32990853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:82068514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGTCTCTT TCCAGACAGC GTGATTACAC ACCAAAATTT
  TCTGACACCT CAAACACACC GAGGGCGGAT TGTCTCCACA CAACCAGGCT GTCAAAGGCA
  Y
  GAGCCTGGTG GTTGGGAACA CTTAGGCACT CTGCAAGGTG GGGAGTGGCT GTGGGCTGCC
  CCTGTGCCCA GGTCTGCTCA GTCTGGGTCT AGGGGAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46220326	mCV24040700	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145259356	ENSMUSSNP3147901	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322727465	CHEV_8_83865784	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32990853					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:82068514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20635	CpG island 20635	122 bp proximal
Gm51582	predicted gene, 51582	within coordinates
Inpp4b	inositol polyphosphate-4-phosphatase, type II	671 bp upstream
Rr666047	regulatory region 666047	201 bp distal
Rr666048	regulatory region 666048	187 bp proximal
Rr666049	regulatory region 666049	688 bp proximal
Tssr78167	transcription start site region 78167	616 bp upstream
Tssr78168	transcription start site region 78168	639 bp upstream
Tssr78169	transcription start site region 78169	676 bp upstream
Tssr78170	transcription start site region 78170	722 bp upstream
Tssr78171	transcription start site region 78171	816 bp upstream