rs32990892 SNP Detail

Summary

• ID
  rs32990892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164117037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCCACTC AAAATCACTC TTCTCTTTCC ACCAGGGTCA
  AATTCATTCT GGATTAGGAA CCTTTGTCAG TGCAGTTTGT CTGCAGAATC ACAGAAGTGT
  Y
  CTGACCTTGT TCTGTTCTGA CTACTATCTC AATGTGAGCT TTGAGGTTGC TATAATGATA
  TTACATCCAC GGAGACCCTG GAGCTTTAAT TTTGGAGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45222554	mCV23736632	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148221258	ENSMUSSNP4877442	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs32990892					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164117037 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	1995 bp proximal
Svs4	seminal vesicle secretory protein 4	839 bp downstream
Tssr21549	transcription start site region 21549	835 bp upstream
Tssr21550	transcription start site region 21550	941 bp upstream
Tssr21551	transcription start site region 21551	1985 bp upstream
Tssr27409	transcription start site region 27409	861 bp downstream
Tssr27410	transcription start site region 27410	884 bp downstream
Tssr27411	transcription start site region 27411	921 bp downstream
Tssr27412	transcription start site region 27412	959 bp downstream
Tssr27413	transcription start site region 27413	966 bp downstream
Tssr27414	transcription start site region 27414	984 bp downstream
Tssr27415	transcription start site region 27415	1000 bp downstream
Tssr27416	transcription start site region 27416	1960 bp downstream
Tssr27417	transcription start site region 27417	1969 bp downstream