rs32991016 SNP Detail

Summary

• ID
  rs32991016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189136214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACCCTGA AGAATAAACA
  GAATCAGATG GCGTTTATCG CATGAGCTTC ATGGAAAAGG CTTCTGCACG TCTGGGTCAA
  GGAGCACCTT AGATAAGCAT CAGACGATTT AGTGCTGATG TGCAGAGGTG GCCTTGCTTT
  AAATTAGCAC CTGAGCATGG GCCATTGGTG GGAAAGCAGC ACCCAGTGGC TGTGTGTTCA
  Y
  GTTTTATATT CACACAGGGA AAGGCTGGCA GTGCGATACG GATGTTGGTG AGGACTGGCA
  AACGCTTCTG GAACACAAGT CACTCTGGTA ACCTAAGGGG CTGAGAGATA TGGCTTGTGT
  TAGCCAGGGT TCTCTAGAGG AACAGAACTG ATAGAATGAA GATGGATAGA AGGAGGGATG
  GATGGGTGGG TGGATGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46757424	NES10640355	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32991016					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46757424	NES10640355	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189136214 () rs orientation: forward

Symbol	Name	Function Class
Kcnk2	potassium channel, subfamily K, member 2	1744 bp upstream
Rr372626	regulatory region 372626	1596 bp upstream
Rr425790	regulatory region 425790	1309 bp distal
Rr425791	regulatory region 425791	558 bp distal
Rr425792	regulatory region 425792	1170 bp proximal
Tssr15714	transcription start site region 15714	1256 bp upstream
Tssr15715	transcription start site region 15715	1247 bp upstream