rs32991535 SNP Detail

Summary

• ID
  rs32991535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189074232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTT TCAGAAAGCT TTTTCATAGA
  R
  AGAATTAGAA ACCACCACCA ATGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46756890	NES10642957	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		G	G	A		G
ss320190719	CHEV_1_191165914	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32991535					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46756890	NES10642957	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189074232 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A430027H14Rik	RIKEN cDNA A430027H14 gene			1016 bp upstream
Cpgi1195	CpG island 1195			699 bp proximal
Kcnk2	potassium channel, subfamily K, member 2			Intron
				Noncoding-Transcript-Variant
Rr425779	regulatory region 425779			194 bp distal
Rr425780	regulatory region 425780			416 bp proximal
Rr425781	regulatory region 425781			1157 bp proximal
Rr425782	regulatory region 425782			1310 bp proximal
Rr425783	regulatory region 425783			1407 bp proximal
Rr425784	regulatory region 425784			1662 bp proximal
Rr425785	regulatory region 425785			1920 bp proximal
Rr425786	regulatory region 425786			1960 bp proximal
Tssr15712	transcription start site region 15712			1307 bp downstream
Tssr15713	transcription start site region 15713			1672 bp downstream