rs32991540 SNP Detail

Summary

• ID
  rs32991540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189086361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAATAAA ATTTAACTAT
  AGTTTGCTGG TTGCTAAGAG AACCAGTGTA TGTGATAAAA TATAAACACG GTAAGGACCC
  TGGAGAGGGT CTGGGCTCAT AGCCAGCAGG TGTGCAATGC CCCTAGCACT GTGACTCATA
  TGGTGAACAG GTTTACCAGG AATCTCACTC CTGTCCTTAC CACCACAGTG CCACACTAGG
  Y
  TCATTTTAAT TAATACTAAG TTGTCAAATA TTTACTGAAC TATTTTTAAC CACTGGTGGA
  AATCTGTTAG CCACTAAGGG TAGCTATGAA TACTGTTTCA TGACCTTTTT CATTTTCTTC
  CTGTTTTTTC TATATTTACT CCAAGCAGTG GAATGCTAAA TTTTGTGGTG GTTTTTCTTT
  GGATGGATAT TGGGTGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46756896	NES10642210	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32991540					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46756896	NES10642210	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189086361 () rs orientation: forward

Symbol	Name	Function Class
Kcnk2	potassium channel, subfamily K, member 2	Intron
Rr425789	regulatory region 425789	within coordinates