rs32994546 SNP Detail

Summary

• ID
  rs32994546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84925615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGG ACAGATAATG AGGGTCAGGG
  Y
  AGTCGCCAGG GTCTGCGAGT TGTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46221087	mCV24182190	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss145374857	ENSMUSSNP1993358	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss322748097	CHEV_8_86722885	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32994546					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84925615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20681	CpG island 20681	913 bp distal
Cpgi20682	CpG island 20682	174 bp distal
Cpgi20683	CpG island 20683	1156 bp proximal
Gm26887	predicted gene, 26887	262 bp upstream
Gm37352	predicted gene, 37352	1883 bp upstream
Gm56830	predicted gene, 56830	401 bp upstream
Gm56836	predicted gene, 56836	within coordinates
Gm64014	predicted gene, 64014	991 bp downstream
Gm65345	predicted gene, 65345	1958 bp upstream
Rr186982	regulatory region 186982	within coordinates
Rr186983	regulatory region 186983	785 bp proximal
Rr368563	regulatory region 368563	1427 bp downstream
Tssr2623	transcription start site region 2623	1508 bp upstream
Tssr2624	transcription start site region 2624	200 bp downstream
Tssr78371	transcription start site region 78371	1570 bp downstream
Tssr78372	transcription start site region 78372	1849 bp upstream
Tssr78373	transcription start site region 78373	1874 bp upstream
Tssr78374	transcription start site region 78374	1945 bp upstream
Tssr82076	transcription start site region 82076	1393 bp upstream
Tssr82077	transcription start site region 82077	1306 bp upstream
Tssr82078	transcription start site region 82078	1027 bp upstream
Tssr82079	transcription start site region 82079	622 bp upstream
Tssr82080	transcription start site region 82080	592 bp upstream
Tssr82081	transcription start site region 82081	563 bp upstream
Tssr82082	transcription start site region 82082	1631 bp downstream
Tssr82083	transcription start site region 82083	1744 bp downstream