rs32996130 SNP Detail

Summary

• ID
  rs32996130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189133994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAAGTC TACTCTACGC
  AGTGACACTT TCTTCTTGCC TAGTCCCGGA TTCTAAATAT CTCTTCCCCA TAGGGAGATA
  GGATAGGTAA ACTTAATAGT TCAGGTTCTC TCTAAATCCT GATAGCACTG GGTGAATCTC
  TATACGTCCG TGTTTTGATA ACAGGATTAG CCACATGAAA TCAAAGTAAT AAACTATCAG
  Y
  ATGTAGATTC GGTGTGATTT ATAGATGTAC ATTGATGGAT TACGCATTGC CAGAATAACG
  TGTTGCACAA TAAAGCTCTG CATGATGTGC TTGCTGTACA AGGCTCTCCT AAATCAACCT
  GCAGCTTCTT CCAGCATTAC AGAATCACGG AAGGTGTTTC AGCATCGAAC GCTCTGCTGG
  AGCCACCCAA CGAGTTTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46757397	NES10640346	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32996130					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46757397	NES10640346	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189133994 () rs orientation: forward

Symbol	Name	Function Class
Kcnk2	potassium channel, subfamily K, member 2	Intron
Rr425790	regulatory region 425790	406 bp proximal
Rr425791	regulatory region 425791	1179 bp proximal
Tssr15714	transcription start site region 15714	951 bp downstream
Tssr15715	transcription start site region 15715	965 bp downstream