rs32998003 SNP Detail

Summary

• ID
  rs32998003
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:76365572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATCCTTAT CAGACCAATT AGGAAAAGTT ATTTATGTTT
  TCTTTTCTTG TTTTATTTTA CCATAAACTA AGAAACAGGC ATTGAATAAG AATCTGCATA
  W
  GTATTTTTTT TTTTGTTTCA GAGTCTATAT GAAAAATCAC CCTAATACCA GAGTACCATA
  GATTACCTAA ATAAAATTCT TGAAATATCC TTTAATCAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45723737	mCV24416651	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss146590050	ENSMUSSNP964946	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs32998003					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76365572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14391	CpG island 14391	1993 bp proximal
Ptprd	protein tyrosine phosphatase receptor type D	within coordinates
Rr90206	regulatory region 90206	29 bp proximal
Rr101140	regulatory region 101140	28 bp proximal