rs32999509 SNP Detail

Summary

• ID
  rs32999509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189283932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACACACTA GGCTGACCTG
  AAACTTCAGG CTGTTTTCCG CTAGTTAAAT TAGGATGATT GCTCTCTCTG CCCCGCCATC
  TCAGCCTCAG ACATGCTATT TTCTCTCCCC AACATCCTTT TCCTGTTTTG TTTGGATTTT
  TTTCTTTCCT CTCCACAGTC TCTGCCTCTG ACCCTTCAGG CTTCTGGCCA GTCCACCGTG
  Y
  CCTACTCTGA ACAATTTCCA CAGCCTCGGA AATGATTGCC ACCACCTGCC CACCACTGCC
  AGAAGCAACA GTAGCTGCCG GCCCCTATGT GGCACTTTAA AATCTTAACT AGCTTCATGC
  CACGTTATTT TTAATCCTGA TCATAACTCT ATGAACATAT TCCTTCCCAT TTTTTAAGTA
  ACTTGGCCAA GGAGCTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46758837	NES10634921	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32999509					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46758837	NES10634921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189283932 () rs orientation: forward

Symbol	Name	Function Class
Rr425797	regulatory region 425797	697 bp distal