rs33000103 SNP Detail

Summary

• ID
  rs33000103
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124749422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT CTTTGCTCCT TTTGTCTGAC
  D
  TTCATGAGGA TCCTGGGGAG AAGAT                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss46221907	mCV23949783	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss145838155	ENSMUSSNP5167675	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss322855975	CHEV_8_126546583	CHEVERUD	SCREENING_POP	f	SNP				A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs33000103					SNP	A	G	A	A	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124749422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21265	CpG island 21265	837 bp distal
Mir1967	microRNA 1967	within coordinates
Taf5l	TATA-box binding protein associated factor 5 like	1286 bp upstream
Tssr80012	transcription start site region 80012	1482 bp downstream
Tssr80013	transcription start site region 80013	1168 bp downstream
Tssr80014	transcription start site region 80014	1153 bp downstream
Tssr80015	transcription start site region 80015	1104 bp downstream
Tssr83422	transcription start site region 83422	1728 bp upstream
Tssr83423	transcription start site region 83423	1577 bp upstream
Tssr83424	transcription start site region 83424	1238 bp upstream
Urb2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	within coordinates