rs33001664 SNP Detail

Summary

• ID
  rs33001664
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150319559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGGCAA CAGCAGCTGC
  CTGAGAGAAT GTTCCACTGT AGATTCTTGC CTGATTCACT GGGTCTAGCA GACAGCTGTT
  TAATTCTATC TTTATCTCCC CGGCTGTTTT AGTGTAAAAT GAGGAGGTTG TCCAGAGCCC
  TCTCAGTGCC ACGGTCTTAG ATGCACACAG AAAAGAAGAG TTCAGAGTGT ATGATTTCTC
  S
  AGGTTCTTAT AAAACTTGGG AGAGGGCTTT TGGTTTAGTT GCTGAGTCAT GGGACTAGAG
  ATAATTGGTT TATGCAGCCA ACACAGGTTC GTGTATTGCT GGGGAAGTCT CATTTTACAA
  TCTCCTTGAT GTTTCTTTGT TTAATTTGAT CCCAAAGATC TTCTTTAGCA ATGGAAACTG
  TTTCCTGTAC TAACACCTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45724146	mCV24222396	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33001664					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150319559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15348	CpG island 15348	1359 bp proximal
Eno1	enolase 1, alpha non-neuron	1619 bp upstream
Rr377416	regulatory region 377416	968 bp upstream
Rr605238	regulatory region 605238	within coordinates
Rr605239	regulatory region 605239	1360 bp proximal
Tssr40390	transcription start site region 40390	1583 bp upstream
Tssr40391	transcription start site region 40391	1668 bp upstream
Tssr40392	transcription start site region 40392	1687 bp upstream
Tssr40393	transcription start site region 40393	1700 bp upstream
Tssr40394	transcription start site region 40394	1714 bp upstream