rs33002428 SNP Detail

Summary

• ID
  rs33002428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144557981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCTATGAG CTGCTTTGGG TCTTTTTGTA AGAGCAGCAT
  GTATTCTTAA CTGCTGAGCC ACCCTTCTAA GATCTTCTTA ATGAATTATT AGCTGAGTTC
  R
  GAGCAGGGTC AGTAGTGTTG TTTACTGCTG GGGAAACATG TCCCTATTGA GTCCCATATA
  CACAGAGATG TGGGGCATGG TTCTCCACTG TGGCTCAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45224426	mCV25227930	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss147805211	ENSMUSSNP399938	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33002428					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144557981 () rs orientation: forward

Symbol	Name	Function Class
Dtd1	D-tyrosyl-tRNA deacylase 1	within coordinates
Rr46878	regulatory region 46878	within coordinates
Rr374001	regulatory region 374001	within coordinates
Tssr20549	transcription start site region 20549	1267 bp downstream
Tssr20550	transcription start site region 20550	1202 bp downstream
Tssr26613	transcription start site region 26613	1499 bp upstream