rs33002450 SNP Detail

Summary

• ID
  rs33002450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165668050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCAACTGT GCTATCCCTG CCTGTGGAGG TGTCTGAGTA
  TGGACAGCCT CCTCACCCTG GGCTGACTAG CAGCTGTCAT CAATGCTAAC AGCAGAGGGC
  R
  GGAGGGAGCA GCAGGAGGAA ACAGGCCAGG CCTCAGGGCT GGGCTGGGAG GATTTGCCAA
  GTGACAGTCC TTTCTGGACT TTGTGGACTA TAGTGAGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45223964	mCV22665685	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss148245299	ENSMUSSNP1621804	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33002450					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165668050 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr570021	regulatory region 570021			within coordinates
Rr570022	regulatory region 570022			within coordinates
Tssr27636	transcription start site region 27636			1901 bp downstream
Zmynd8	zinc finger, MYND-type containing 8			Intron
				Noncoding-Transcript-Variant