rs33003439 SNP Detail

Summary

• ID
  rs33003439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:59160163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATTAG ATATTTTCTT
  CATTTACATT GCAAATGTTA TCCTGAAAGT CCCCTATAGC CTGCTCCCCA ACCCATTGAA
  ACCACTATTA AAAGTTTGTG TTTAAGTCTG TGATTTCAAT TTAATGCAAT TTAAAAGAAT
  GCTAACTGAG GAAAAGGAGA CTATATTATT ATTATTGCCA TGTACAAACG TCGTCATATA
  Y
  AGAACATTAC GGTGGGAGGC CTTGTGAAAA GTCTTTTATC CATACTTTAT AGATATGGGA
  TAGAATGCAA AGCTTACATA AACCCAAACA TGAGAATCTA TGACACTGTA CTCCTTCATC
  TCGTTCCGTA GGTGAAGATC ATAGCTCTAG AGCCACGATA AGACACTCTG TGTACTATTC
  TTTCATGGGG ACTTTTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47743739	NES10246133	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33003439					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47743739	NES10246133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:59160163 () rs orientation: forward

Symbol	Name	Function Class
Gm43394	predicted gene 43394	1827 bp upstream
Rr377997	regulatory region 377997	within coordinates