rs33003896 SNP Detail

Summary

• ID
  rs33003896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119768667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAGGGTAG ATGACTTTGC ACAGGTAAGG GGCCACAGGG
  AGACATAATG CTGGATATGA GAGACTCACT CTATTTACAT GCCAGGGACA AGACAGGGGT
  Y
  AGGGCTTCTG TGGCCCTTGT GGTTGGAACT GTCAGTAGCT GGACCAGTGC CTGAGGAGGT
  GGAACCCGGG CAGGTCAAGA AGCCTGATTG GGTAGCCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45724987	mCV22643522	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147338403	ENSMUSSNP7149089	ENSEMBL	ENSEMBL_Sanger	f	SNP				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33003896					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119768667 () rs orientation: forward

Symbol	Name	Function Class
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Rr91833	regulatory region 91833	within coordinates
Rr102092	regulatory region 102092	813 bp proximal
Tssr38760	transcription start site region 38760	389 bp upstream