rs33004206 SNP Detail

Summary

• ID
  rs33004206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189281784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGATTGA TTGATTTTAT
  GTACATGAGT ATAATATAGC TGTCTTCAGG TACACCAGAA GAGGGTGTTG GATCCCATTA
  CAGATGGTTG TGAGATACCA TGTGATTGCT GGAAATTGAC CTCAGGACTT CTGGAAGAGC
  AGTCAGTGCT GTTAACTGCT GAGCCATCTC TCCAGCCCCA CAATACAAGT TTTAAAAATG
  Y
  AAAGAAGTTT GAATTCACTG GGCCTTATGC TGGTCTCCTA GGTACTGTTG GGCACATCAA
  AGGATATTGA GCATCGTGAA AGAGGTTTCC AGAGGTGATG TACAGGCCTG TATTTGTGAC
  ACCTTTTAAT CTCTTAAGAC TGCCAAATGT CCTCCATGTC TCCAGGTAAA TGTGCATGGT
  CAGGGAAGTG GGGGTGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46758804	NES10634965	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33004206					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46758804	NES10634965	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189281784 () rs orientation: forward

Symbol	Name	Function Class
Rr425797	regulatory region 425797	1430 bp proximal