rs33004232 SNP Detail

Summary

• ID
  rs33004232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:59159407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATCTGTT GACGTTATTT
  AAATTACATG CCAAGATTTT CACTCTCTTC AGCTTTTACA CAAATAAAAT AAAATCAACC
  AGAGCCTAAC AACATTTGCC CATCTTCTTT CCCTTCTACT TTCCTTTCCT TTTGTCTCTC
  TTCTTACCAG TTCTTTTGTC CCTGTTTACT ATGTTCTTCC CTAAAACCTA CCATCTATCA
  Y
  GTTCCTACAT GTGAGTCTTC ATAATTGCAG TCTCTTCTGT ATGGATGGTT CATAGTCTGC
  TCTAGTTCCT AACTGTTCTC GGTGTTAGAT TGTTCAATGA AACTTTCCTT GAAAGGTCTC
  TGTCTAATGC CACCTACCTC CCACACATCC ATCCTTACTC TTTCTTTAAT TATTTATTTA
  ATATTAGTTA TCTTGATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47743753	NES10241546	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33004232					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47743753	NES10241546	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:59159407 () rs orientation: forward

Symbol	Name	Function Class
Gm43394	predicted gene 43394	1071 bp upstream
Rr377997	regulatory region 377997	526 bp upstream