rs33004979 SNP Detail

Summary

• ID
  rs33004979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43425961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG CCTTTCTGGA TGGGGAGCCC
  Y
  CCTGACTCTG TGCTAGCTGA GCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45724835	mCV23167601	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss146239124	ENSMUSSNP5871610	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321097733	CHEV_4_43438833	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs33004979					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43425961 () rs orientation: forward

Symbol	Name	Function Class
Cimip2b	ciliary microtubule inner protein 2B	1058 bp downstream
Cpgi14187	CpG island 14187	within coordinates
Cpgi14188	CpG island 14188	1504 bp proximal
Rusc2	RUN and SH3 domain containing 2	within coordinates