rs33005418 SNP Detail

Summary

• ID
  rs33005418
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84625464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACGTTGAACT TGAATAAGCT GCCGGATTCG GTATTTAGGC TGCTTTTGGG TGGATTCCCT
  TCCCCAAGGA TCCAAGCCCA GTTTTTGCTT CTCCTCAGCC ATCAATCTTA AGAGTTGCAC
  CCATCCTTCG TAAAACGGAT TCTCAGCGCG GCAGCTTCCA AGCTCTGTTC TTACCTCTCT
  GGATTCCGCT CCCCTGAACC CACACCCCAA CCCCCGCACT GAGTTGTCTA TATTGCTTAA
  GTGCCTGGTT TTGGCCCCGG GTTCAGCTTT ATAGCCTCCC CCCACCAAAA AAAAAAAAAA
  M
  AACCAAAAAA ACAAATAAAC TATAAGTCTA GGCAGTGGTA GCTTTGGCTC CAGAGATTTG
  GGCCAGGTCG ACCCCCTTTC CCATCTAGAG AAGCAATCCT AGGCTTCATC TGTAGCTGGG
  GGGCTGAACC CAGCCTCTGG CTTCACTCAC TAAGTCCAAA GCCTAGGAAT CTAAGTCCGA
  TCCGCTGCCC TACTTCTCCG AGTCCATCAC CTGCAGTGTA GTTCTTACGT TGTGGAAATC
  TGCACCGGGC TTTTGCTCTC TCCATCAACC TAAAATTCAA TTTTTTTTTT CTTCCCTACC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss46221968	mCV24180482	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs33005418					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84625464 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	1270 bp upstream
Cpgi20661	CpG island 20661	1352 bp distal
Cpgi20662	CpG island 20662	550 bp proximal
Gm26721	predicted gene, 26721	within coordinates
Rr186961	regulatory region 186961	within coordinates
Tssr78300	transcription start site region 78300	1123 bp upstream
Tssr78301	transcription start site region 78301	1253 bp upstream
Tssr78302	transcription start site region 78302	1261 bp upstream
Tssr78303	transcription start site region 78303	1279 bp upstream
Tssr78304	transcription start site region 78304	1612 bp upstream
Tssr78305	transcription start site region 78305	1757 bp upstream
Tssr78306	transcription start site region 78306	1785 bp upstream
Tssr78307	transcription start site region 78307	1871 bp upstream