rs33005814 SNP Detail

Summary

• ID
  rs33005814
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:59158775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGATGCTT CTGCTTTCAG
  TTGGGAAATT TCACTGAAAA GCAGATTCTG AACTTTTGTG CTGGATCATC TCGTCTCTTC
  TTAATACTTC ACCTTTCACT CTTCTTCTCT TTAACTTTAA AGGATAAAGG GAGGGTGGAA
  AGAAAGGGGG AGGGAGAGAA GTATGAAGAG GGCAGGTAAA GGAAATAGAG GATGAATGGA
  R
  GGAATTATTT AGAATCTACT ATCATCTAAA CTTTGTCATT TTTGAAGCAA GCTTCTGATT
  GACCCTTCGG TCATCTCCTC CCCCATCATA AATGGCAATG ACACTCTATG GATAATCAGT
  CTGCAAACTA TGATGTTACT CCTCTTTTCT CCTTAATCCT CATATAATCA GTCTAAAGTC
  TTGTTTTCCC TTAGATTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47743765	NES10241712	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33005814					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47743765	NES10241712	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:59158775 () rs orientation: forward

Symbol	Name	Function Class
Gm43394	predicted gene 43394	439 bp upstream
Rr377997	regulatory region 377997	1158 bp upstream