rs33006426 SNP Detail

Summary

• ID
  rs33006426
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:59158376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAAAGCA TGTGAGATCT
  CTTTTGGACT GGATATCCTG CCCAAATGCC CAAGTTTTGT GTCTTTTCTC AAAGGATCGA
  CTGCTCTTTT GGCCTCCTAT TTCTTCACAA TTGCAGGGGC CGTGACCATC TTCTTCCCTT
  TGGCCTTCTT TCCTTTGAGC AAATCGTTTG GCTGGAGGAG AGAGCTCTTA GAATTTTTTT
  W
  AATGAATATT CTACTTCTTA GTGCATTTTA TCAGCCACTT ATAAATATAA TTCATCTTTT
  TTTTTATTTC GCTGCAAGTA TTCACCATCG CATTGATTTT CCTCACTCCC CACCGAAAAT
  ACTCTTTTAC TGAAAAGCAA AACAGAACAA ATAGACACGA GCTTCCACCC ACTAAAACAG
  GTGTGCATGT GAACGCTCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47743777	NES10241704	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33006426					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47743777	NES10241704	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:59158376 () rs orientation: forward

Symbol	Name	Function Class
Gm43394	predicted gene 43394	40 bp upstream
Rr377997	regulatory region 377997	1557 bp upstream