rs33007199 SNP Detail

Summary

• ID
  rs33007199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125230816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTA GTGGTTCTGA GATGTTCTAC
  R
  GGGTGATCTC TGCCAATGCA GTAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47244370	NES11567437	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G		G	A		G
ss322448945	CHEV_7_132775158	CHEVERUD	SCREENING_POP	f	SNP								A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33007199					SNP	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47244370	NES11567437	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125230816 () rs orientation: forward

Symbol	Name	Function Class
D7Mit101	DNA segment, Chr 7, Massachusetts Institute of Technology 101	1395 bp proximal
Il21r	interleukin 21 receptor	within coordinates
Rr370582	regulatory region 370582	841 bp downstream
Tssr68991	transcription start site region 68991	1017 bp downstream
Tssr68992	transcription start site region 68992	984 bp downstream