rs33008012 SNP Detail

Summary

• ID
  rs33008012
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117013303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGGATGGAG CTCGCTCCCC CGCGGCCCGA CCCGGCCCGC
  AGCAACACTC ACCCATCGCT CGGCGCTGGC TGGAAAGAGG AAGCGCAAAG CTTCACGGTC
  S
  GGTTTCTAAA ACTCAGCCCC GCCTTCTTTA CGTCTCTTCC GGTTGCCGGG AAGGACCTGG
  GGCCGCGGCG AGCCTGGGAC GCTGGCACAG GGGAGGGTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45725261	mCV22659070	ABI	CRAMUS_MOUSE	f	SNP			C	G
ss147285277	ENSMUSSNP5498853	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33008012					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117013303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	within coordinates
Gm22980	predicted gene, 22980	1944 bp upstream
Gm26330	predicted gene, 26330	817 bp upstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	1594 bp downstream
Rr398411	regulatory region 398411	within coordinates
Rr598069	regulatory region 598069	127 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	1532 bp upstream
Snord55	small nucleolar RNA, C/D box 55	258 bp upstream
Tssr42956	transcription start site region 42956	258 bp upstream
Tssr42957	transcription start site region 42957	21 bp upstream
Tssr42958	transcription start site region 42958	16 bp downstream
Tssr42959	transcription start site region 42959	38 bp downstream
Tssr42960	transcription start site region 42960	79 bp downstream
Tssr42961	transcription start site region 42961	93 bp downstream