rs33008113 SNP Detail

Summary

• ID
  rs33008113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109747545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTC TTTCCTCTGT TTGCAAAGCT
  Y
  TCAGTGCCCT TGCCCTTAAG AACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45225397	mCV23138119	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss147206175	ENSMUSSNP6904016	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33008113					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109747545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	268 bp proximal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	447 bp upstream
Rr397176	regulatory region 397176	158 bp upstream
Rr562509	regulatory region 562509	within coordinates
Rr562510	regulatory region 562510	458 bp proximal
Rr562511	regulatory region 562511	563 bp proximal
Rr562512	regulatory region 562512	602 bp proximal
Rr562513	regulatory region 562513	990 bp proximal
Tssr19307	transcription start site region 19307	371 bp upstream
Tssr19308	transcription start site region 19308	396 bp upstream
Tssr19309	transcription start site region 19309	439 bp upstream
Tssr19310	transcription start site region 19310	479 bp upstream
Tssr19311	transcription start site region 19311	523 bp upstream