rs33008227 SNP Detail

Summary

• ID
  rs33008227
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189396689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGAGGG GTGGTTGTTA
  TGTCTGCATG CCTGTCTTTC TGTGTCTTAG GCCCTAACTG CAGACATTTA AGAAAACAGC
  AAGCTCAATG AAAAGATTAG GGTGTCTTTC CCCATTCTGG CATTAGCTTT GTAAATAGTG
  GTTCCTAACG AAGGAATGTT CAGCCAATCC TGGGACCCAG CAGGCTTATA ATGCTATGAC
  K
  GCAACCAACC CAAGAATTTA AGAGGCCAGA ATTTAGAAAA TGAACATCTG AAAATGGATG
  CACAGGCTGC CATCCATCAG CAATTAGTTT TCCATGAGGC TACAGCCACT TAAGTCTTGA
  TTGGGCAGCT CATTAGCAAC AATGAGTTAA GCATACAAGG GTATATTATA TTCTCCTAAG
  CATCTCTTCA GTTCTCACGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46760136	NES10641902	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33008227					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46760136	NES10641902	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189396689 () rs orientation: forward

Symbol	Name	Function Class
Cenpf	centromere protein F	Intron
Gm70084	predicted gene, 70084	within coordinates
Rr425818	regulatory region 425818	629 bp distal