rs33009944 SNP Detail

Summary

• ID
  rs33009944
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:82284091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTGATT AAATTTGGAC
  TGCTAAAAAT AATCAAGGGT AGTATTGCCA TCTCATCTCA AATCTTCTAT GTAAACAAAA
  GCATATGATA CAAAAAGTTC AGAACTGAGG AAGTGCAAGT CAGTAAAGTA ATTGCTGTGA
  AAACATGAAG ACTTAAGTTC AGATCTCTAG CATATACATA AAAGCCAATC TATAACCCCG
  K
  CATTGTAGAA AGTGGGAAGA TACAAACCCT TCATGATTGA TTACCAGCCA CATTCCATGA
  AATAGCCTGT GTCAACAGAG TAACATAGAG ATAAAACCAG ACATCAATCA CTGCCCCCAT
  ACTCGTATAT AGTAGCATAT GGAAATACAT GCAAGCATGC ATACACATGA GCAGGTAAAA
  TCACACACAC ACACACACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47744276	NES11286430	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33009944					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47744276	NES11286430	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:82284091 () rs orientation: forward

Symbol	Name	Function Class
Rr197700	regulatory region 197700	510 bp proximal
Rr197701	regulatory region 197701	1910 bp proximal
Rr205139	regulatory region 205139	1980 bp proximal