rs33009952 SNP Detail

Summary

• ID
  rs33009952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:82285060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTCGGA GCTCCACTGT
  TCTTTGGCAT CATTAAGATA GTGAAGTATA CCTTTAGGAG AAATTTGGAG AACACTGCTG
  GTCTATTTCG AAGAAGCCAG TGTATGAGGG GAACAAACAT AAAGTATCTT AAGGTGGAGA
  AAGAATCCAG TGAAGGTAAA AAACTTAAAT TAAAAAGAGC ATAAGCCACT TCTTTGTGAA
  R
  TTTACTGGCT TAGCATGAAG ATTTACCAAG AAACACTTGG CCAACTGGGA ACAGAGTTAA
  AGTAAATAGG TTTGGAATGA AGATTCATCT GGGATGTGTG CAAGGCTCTA AGATTAATCT
  TGTTAGAGAT TAATCAAAAT TAAAATCAAA ATTAAACTAA AGAAAGTAAA CAGATGGATT
  CTCAAATCAG AGAGGTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47744284	NES11286356	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G		A	A		G
ss323041529	CHEV_9_82296614	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33009952					SNP	G	G	G	G	G	G	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47744284	NES11286356	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:82285060 () rs orientation: forward

Symbol	Name	Function Class
Rr197700	regulatory region 197700	260 bp distal
Rr197701	regulatory region 197701	941 bp proximal
Rr205139	regulatory region 205139	1011 bp proximal