rs33012102 SNP Detail

Summary

• ID
  rs33012102
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121950628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACT TTTATTAAAT ACAAGGCCTT
  W
  CCCCTTATTA GGAAGGATAT TCTTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45225998	mCV25324170	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss147409373	ENSMUSSNP7185363	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320487095	CHEV_2_121945883	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33012102					SNP	A	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121950628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12168	CpG island 12168	1551 bp distal
Gm75635	predicted gene, 75635	1158 bp downstream
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Rr55508	regulatory region 55508	1027 bp distal
Rr373779	regulatory region 373779	879 bp downstream
Spg11	SPG11, spatacsin vesicle trafficking associated	1761 bp upstream
Tssr19803	transcription start site region 19803	1593 bp downstream
Tssr25950	transcription start site region 25950	1798 bp upstream
Tssr25951	transcription start site region 25951	1750 bp upstream