rs33012122 SNP Detail

Summary

• ID
  rs33012122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72304960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGTCTGCCTG AAACTAGTAC TTTTTTCCTG TCGCTTCCTT TCTGACCACT CAGATTTCTG
  GCTGTATATC ACCAGCTTGT ATAACTATTG TAGAAGTATG CATTGTTCCT TTCCTGTCTT
  CAGCTTTTCA CTGTACTTTC TTCCTCTTCC TCCTCCTCTT CTTCCTCTTT CTCTTCTCCT
  CCTCCTTCTC CTCCTCCTCC TCCTCCTCCT CCTCCAAAGT ATCATACCTG AAATTCTCTT
  TTGTATCTCT GCTCCTCCAT CAGAGTGTAC ACTCTCTGGA CCTTGTATCC TCAGTACTCA
  R
  AATAGCACCT GCTTACAACC TTGCACTCAG TTAGGGGCAG GACTTTGAAC CGCCCTGATG
  GTGAAGCCCA GAGGATATAC ATTGTCTGCA GGACACACAC AAGCACAGAA GTGAAAACTT
  TAAGGAAACA ACATGCACAC GTCCTGGGCT CACATTGGAT TTCGTTGAAA AAGAAATGCA
  GGAGCACAGA GAGACAAGCC TGTTCCAAGA AGAGTAAAAA TGCTCAGTGT AGAACATTAC
  CCAGGCAAAG TGGCCCGGAT GCCCCCTTCG TTCTGTGACC TCACATGGTC AGTTCTACTT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45226096	mCV22562808	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33012122					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72304960 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	1580 bp upstream
Cpgi11756	CpG island 11756	1296 bp proximal
Rr397036	regulatory region 397036	1150 bp upstream
Rr558978	regulatory region 558978	181 bp proximal
Rr558979	regulatory region 558979	1053 bp proximal
Rr558980	regulatory region 558980	1554 bp proximal
Tssr18351	transcription start site region 18351	1380 bp upstream
Tssr18352	transcription start site region 18352	1557 bp upstream
Tssr18353	transcription start site region 18353	1597 bp upstream
Tssr18354	transcription start site region 18354	1609 bp upstream