rs33012713 SNP Detail

Summary

• ID
  rs33012713
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189395697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGTAAAG GCACCCTTGA
  AACTTTTAAT AATATTTTAA TAGCTGAAAG GTACATGCAC CTATATTATA CCCTACCCTC
  AAGAACAGGC ATTATCTCCA CTACCTGAGA GAACTTAAGT ATATCTCACA CCTTATGGAA
  TGAAAGAAAT CTGTAAGGCA TTTTTTAAAT TACATTTCAA AAATACCCTT CTAAGAAGTA
  R
  GAAGACATTT TTTGAATCTT AAAGAAACAA TTAAGACCCA TCCTTCAAAA CCTCACTGCA
  CTGTTAGAAA ACAGATGGCC CTGGCGATGC TATATTGGAA GGCTGCCTTC AATTATCAGT
  CTGGTTACTA CCAGCAGATG GGTACCCATG TAACAAAGCC AAATTCAAGA AGAGGGAGAA
  TCTGGCTACT GGAAGTACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46760118	NES10641893	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33012713					SNP	A	A	A	A	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46760118	NES10641893	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189395697 () rs orientation: forward

Symbol	Name	Function Class
Cenpf	centromere protein F	Intron
Gm70084	predicted gene, 70084	within coordinates
Rr425816	regulatory region 425816	1335 bp distal
Rr425817	regulatory region 425817	1423 bp distal
Rr425818	regulatory region 425818	within coordinates