rs33013294 SNP Detail

Summary

• ID
  rs33013294
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140841352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAC CAGGCAAGCA GGGTTTCTGC
  M
  CCCTTCTCCA AAGAAAGGGC AGTCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45725933	mCV23727152	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss147725837	ENSMUSSNP845312	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33013294					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140841352 () rs orientation: forward

Symbol	Name	Function Class
4921514A10Rik	RIKEN cDNA 4921514A10 gene	1619 bp upstream
Rr603650	regulatory region 603650	within coordinates
Rr603651	regulatory region 603651	1389 bp proximal
Spata21	spermatogenesis associated 21	1281 bp downstream
Szrd1	SUZ RNA binding domain containing 1	within coordinates
Tssr44296	transcription start site region 44296	355 bp upstream
Tssr44297	transcription start site region 44297	1232 bp downstream
Tssr44298	transcription start site region 44298	1299 bp downstream
Tssr44299	transcription start site region 44299	1608 bp downstream