rs33013439 SNP Detail

Summary

• ID
  rs33013439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189407481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTTCACG TGTGTGCATG
  CGTGTACTCT ATCATGCAGA TGGGTTCCCA GCTTTTTATT TAGGGGCTGG GGCTCCACTC
  AGGTCCACAG CAAGCACTTT ACCAACTGAA CCATTTCCCT AGCCTCAGAA AAGATTACAT
  GCTTAAGCCA ACAGATCAAA TTCACCTTCT GCCTCAGACA TTAAGATACC TTCATTGTTA
  Y
  AATAAGCTTT AAGTTTTTAA ATTCCCAAGG AATAGTACTA CATGATTTAT AAGAAAAAAT
  ATAAATTTAA CAAATAGTGA CTGAGAATCT ACTTTGCTCT GCATATGGAA ATGGATAGAC
  AACTCAAAAT CACTGGCCAT AAGGACAGAC TGGCATTTTG ATGATTGACA ATCTCATAAA
  TAAATAAATA AATAAATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46760211	NES10641458	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33013439					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46760211	NES10641458	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189407481 () rs orientation: forward

Symbol	Name	Function Class
Cenpf	centromere protein F	Intron
Gm70084	predicted gene, 70084	within coordinates
Rr425819	regulatory region 425819	153 bp proximal
Rr425820	regulatory region 425820	237 bp proximal
Rr425821	regulatory region 425821	409 bp proximal