rs33014617 SNP Detail

Summary

• ID
  rs33014617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126363322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTAGTGAC CTGAATTTTA TATTCTACTC TCCCCTTGCC
  TCTTCACAGC TTCATCCACT TTTAATGCCC AAATATCTAT ACGTTACCAT GTTGCAGCTT
  Y
  ATATTTCCTA CTGTCTGCTG GACAGCTCCA GCTGGATCTA ACAATTCAAA CTTAAGTCCA
  AACCTAACCC TTTCTTTTTC CCCTACAAAA TACATATAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
ss45726151	mCV25174272	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss321300080	CHEV_4_126146773	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
rs33014617					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126363322 () rs orientation: forward

Symbol	Name	Function Class
Ago1	argonaute RISC catalytic subunit 1	946 bp upstream
Cpgi14821	CpG island 14821	364 bp distal
Rr398490	regulatory region 398490	694 bp downstream
Rr599695	regulatory region 599695	1119 bp distal
Rr599696	regulatory region 599696	1410 bp distal
Rr599697	regulatory region 599697	456 bp distal
Rr599698	regulatory region 599698	769 bp distal
Tssr43383	transcription start site region 43383	876 bp upstream
Tssr43384	transcription start site region 43384	824 bp upstream