rs33014840 SNP Detail

Summary

• ID
  rs33014840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181239589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAATGAGGG GAGTAATAAT TTCTCCTGTA GGGGGAATCG
  TGAGCCCCTG GGACCAAAAC TTTTTTTTTT TTTTTCCAAG AGTTGTCTTG AGAACTTTCT
  R
  AAGATAAGCT GGTCTTGCCT TTCCCTTTAT CAGCTGATAG CCCACACTCT GGCCCCAAGG
  GTACTGAGAT TGGAGGATGA TCCACGCCAT AGCCAGGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45226314	mCV23780808	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss148402395	ENSMUSSNP3733548	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33014840					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181239589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12932	CpG island 12932	731 bp proximal
Rr573053	regulatory region 573053	297 bp distal
Rr573054	regulatory region 573054	289 bp proximal
Rr573055	regulatory region 573055	1406 bp proximal
Samd10	sterile alpha motif domain containing 10	Intron
Tssr28219	transcription start site region 28219	187 bp upstream
Tssr28220	transcription start site region 28220	1164 bp downstream
Tssr28221	transcription start site region 28221	1235 bp downstream
Tssr28222	transcription start site region 28222	1332 bp downstream
Tssr28223	transcription start site region 28223	1447 bp downstream
Tssr28224	transcription start site region 28224	1470 bp downstream