rs33014879 SNP Detail

Summary

• ID
  rs33014879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165437703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCGAAGG CTGGGGTTGT
  GGGTGGCCGA GGAGCTGTGC AACTCGCTGG AACTTGGGGC CCGTGGCCCA GCCTCCCCCA
  CGTCGATTTT CTTTTGAAAA GTCTTTACTA TCCTGTAGCC CGCACTGGTC CAGCTCAGGG
  CGCTCACTCT GAAGCTGAAA CTTAACACAA CTTTTCATCA GGACGCTTAG ACTGGGTTTC
  R
  TAGTAAGGGG AGAGCGCGCG GACCTGAGTT ACTATAGCCA GGCAGCTGTG GACTAGCCCT
  AGCTGCTTCA TTGCATTTCA AACAGCTCTC ACGCTCACGG AGTATTAGGG AAGCAGGACT
  GGGAGAGGTG TCCCATCGCT AAAGCCTCAA AGTGCTTTCT TTACTCCGCA GTTGAATGTG
  AGATTTTCTT GCAAGGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45226690	mCV23743212	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss148241330	ENSMUSSNP5598276	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss320608376	CHEV_2_165421283	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33014879					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165437703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	within coordinates
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569954	regulatory region 569954	1829 bp distal
Rr569955	regulatory region 569955	741 bp distal
Rr569956	regulatory region 569956	within coordinates
Rr569957	regulatory region 569957	548 bp distal
Rr569958	regulatory region 569958	371 bp distal
Rr569959	regulatory region 569959	1766 bp proximal
Tssr21727	transcription start site region 21727	703 bp downstream
Tssr21728	transcription start site region 21728	388 bp upstream