rs33017353 SNP Detail

Summary

• ID
  rs33017353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:101845425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATTTTCA AAAAGACATT
  TTCTTCATTA AATAATTTTA AAATATAGTT AGCAGGAACA AAGGCAACAA AATCCAAAGA
  CACTCTGAAA GACATTGAAG GGCATGTGAC ATCTAGATAC GGTGTGGTGT CCTACACTAC
  CCAGCACCCT GCAGCAGCGA CGAGTGGTGA GTACTGTAGG ACTCCAACAA GCTCGGGCTT
  Y
  GGATCCTGCT GCAATGCAGC TTCATTTAGC TGAAATATGT GATACTGGGA TAAATGGACC
  AGGTGGTGGT GGCGCACGCC TTTAATCCCA GCACTCGGGA GGCAGAGGCA GGCTCATCTC
  TGTGTGTTGA AGGTCAGCCT GGACTACAGA ACAAGTTCCA GGACAGCCAG GGCTCCTCAG
  AGAAACCCTG TCTTAAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47245694	NES11403690	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33017353					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47245694	NES11403690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101845425 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Trip11	thyroid hormone receptor interactor 11			Intron
				Noncoding-Transcript-Variant
Tssr117378	transcription start site region 117378			1372 bp downstream