rs33017471 SNP Detail

Summary

• ID
  rs33017471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63131640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA GAGTCTGGCA CTGAGTTCAG
  Y
  GGCCCTTGTA CCACTTACCA GCGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45726809	mCV22875327	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss146440577	ENSMUSSNP1067429	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33017471					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63131640 () rs orientation: forward

Symbol	Name	Function Class
Col27a1	collagen, type XXVII, alpha 1	606 bp upstream
Cpgi14368	CpG island 14368	569 bp proximal
Rr593488	regulatory region 593488	273 bp proximal
Rr593489	regulatory region 593489	537 bp proximal
Rr593490	regulatory region 593490	1059 bp proximal
Rr593491	regulatory region 593491	1542 bp proximal
Rr593492	regulatory region 593492	1892 bp proximal
Tssr1192	transcription start site region 1192	621 bp upstream
Tssr37533	transcription start site region 37533	685 bp upstream
Tssr37534	transcription start site region 37534	731 bp upstream
Tssr37535	transcription start site region 37535	1999 bp upstream