rs33017499 SNP Detail

Summary

• ID
  rs33017499
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144367712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTCCTTAT AGAAAAAAAA TAGATTAAAA ATTTCCATCA
  TGAACCTATG CCTAAACACG AAAACAACAG AGTGCTACTT ATTTTAAATG CATTGAAGCC
  W
  GAAGAGCATT AAATTAATAT GCCACCTACA GATAACGCCC AGTTTAATTA ATGAAATTAT
  TACACGTTGG CTGTATGCTT GCTCTTGACG TCTGCTGTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45226523	mCV22517454	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss147798028	ENSMUSSNP768857	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33017499					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144367712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	1310 bp proximal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	within coordinates
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	1953 bp upstream
Rr566471	regulatory region 566471	240 bp proximal
Rr566472	regulatory region 566472	1067 bp proximal
Rr566473	regulatory region 566473	1596 bp proximal
Rr566474	regulatory region 566474	1967 bp proximal
Tssr20540	transcription start site region 20540	1723 bp upstream
Tssr20541	transcription start site region 20541	1946 bp upstream
Tssr20542	transcription start site region 20542	1999 bp upstream
Tssr26607	transcription start site region 26607	1549 bp downstream
Tssr26608	transcription start site region 26608	1633 bp downstream
Tssr26609	transcription start site region 26609	1647 bp downstream
Tssr26610	transcription start site region 26610	1709 bp downstream
Tssr26611	transcription start site region 26611	1734 bp downstream