rs33019009 SNP Detail

Summary

• ID
  rs33019009
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166902519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGTCA TCAACTCCCA
  AACTACTGTT TGGTTTGCCT TCAACCAGGT TACTTAATCT ACAGCTTAGG TTTCATTTCC
  TTTCTTACAA AATGATTGCT GGGGCAAAAG GAGTACAAGT GTGTCAATCC AAAACCATGT
  GCCAGCTAGC TGCAGGGTGC ATGCTGGCAG CTCAGCTCAG CTCCTGGGAG CTGGAGGCAG
  K
  AGGGTCGGCA AGTTAAGAGC GGGGAAGCAG AAGCAGGAAG ATCAGAAGAA ATTCAAAGAC
  AGCTTCCACT GAGCCTGAGG CCAACATGGA CTCTATGAGA CCCTGCTTCA ACAAACACAC
  ACCCAAGGGC TCAGGACCTG GCCAGGCATT CTTAGGACAC AGCAGTGGAC AGGTTCCCTG
  CTCCCTCCTG CTAGACAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45226809	mCV22943195	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss148261063	ENSMUSSNP1308712	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33019009					SNP	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166902519 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12730	CpG island 12730			1521 bp proximal
Gm75600	predicted gene, 75600			within coordinates
Rr570435	regulatory region 570435			1883 bp distal
Rr570436	regulatory region 570436			245 bp distal
Rr570437	regulatory region 570437			37 bp distal
Rr570438	regulatory region 570438			within coordinates
Rr570439	regulatory region 570439			791 bp proximal
Rr570440	regulatory region 570440			1292 bp proximal
Tssr21785	transcription start site region 21785			1707 bp downstream
Tssr21786	transcription start site region 21786			52 bp downstream
Tssr21787	transcription start site region 21787			671 bp upstream
Tssr21788	transcription start site region 21788			692 bp upstream
Tssr27731	transcription start site region 27731			530 bp upstream
Tssr27732	transcription start site region 27732			472 bp upstream
Tssr27733	transcription start site region 27733			425 bp upstream
Tssr27734	transcription start site region 27734			169 bp upstream
Tssr27735	transcription start site region 27735			143 bp upstream
Tssr27736	transcription start site region 27736			232 bp downstream
Tssr27737	transcription start site region 27737			239 bp downstream
Tssr27738	transcription start site region 27738			250 bp downstream
Tssr27739	transcription start site region 27739			470 bp downstream
Tssr27740	transcription start site region 27740			1959 bp downstream
Znfx1	zinc finger, NFX1-type containing 1			Intron
				mRNA-UTR