rs33020372 SNP Detail

Summary

• ID
  rs33020372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:30238801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAGTCG CTGTTGCACT
  GAGGAAGTGA AGAACTCGGA ATATAAAGGA GATCAGGACT CCGCACGCAC CTGCTTGTTC
  TCAGAACTGA ATTATGTTCT CAACATCTGG GCAGGGTGGA GATGTCCACC GTGGATGGAT
  GGATGGTGGA TGTTCAGGAT GGTTCAGTCC TGCTATGCTA GCTACAAGGT ATCCTTCCTA
  R
  TTCTGCCTTC ACATACTAAT CAGTGGTGGT TCTATGCCCA TCTGTATTTA TGATTCACAA
  AGCACTTCTG CTTACATTAT CCTATCAATG TTTGAATAAT TCTTTCCTAT TGGATAAGAT
  GAATTTTATG TCAATAGCTT GTCATACTAT ACAAGTAACA GTGTGTAGAA ACAGGCAATA
  AACCAATCCA CTGCTCTGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss49433140	NES12619236	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs33020372					SNP	A	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49433140	NES12619236	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:30238801 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd2	catenin delta 2	Intron
D15Mit249	DNA Segment, Chr 15, Massachusetts Institute of Technology-249	698 bp proximal