rs33021039 SNP Detail

Summary

• ID
  rs33021039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:30238584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACCACTG TTCTTTTGAA
  ATCCTGGAAA GGGCAAATCC TTTAGGAAGG GAGCATGGGG ATACAACAGA GAGGATATGC
  AAGGGCTGTT GGGTGTTTTT AAAGATTAGC TATACACAGA CTTGATAGTC CCAGCACAGC
  AGGAGGCTTA AGTCCTGAAG TCAGTGCTTG GACCTACATG GTCAGGTTGC AGGACGGAAG
  Y
  ATCCTGAGCT TACCATAGAG GAGTCGCTGT TGCACTGAGG AAGTGAAGAA CTCGGAATAT
  AAAGGAGATC AGGACTCCGC ACGCACCTGC TTGTTCTCAG AACTGAATTA TGTTCTCAAC
  ATCTGGGCAG GGTGGAGATG TCCACCGTGG ATGGATGGAT GGTGGATGTT CAGGATGGTT
  CAGTCCTGCT ATGCTAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss49433148	NES12619232	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs33021039					SNP	T	T	T	C	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49433148	NES12619232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:30238584 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd2	catenin delta 2	Intron
D15Mit249	DNA Segment, Chr 15, Massachusetts Institute of Technology-249	915 bp proximal