rs33021040 SNP Detail

Summary

• ID
  rs33021040
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:30238443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCACTTCA GTTTTTTAAA
  GGGTAGGTAG GGGAAGCGAA ACATGTAGAT TTAGGAACGG AGGAAAATTT CACAAAACAT
  AGAGGTCAGC CTAGGGACTG TAGTTTAGTG CAGGTAGAAG TATGTTATCG GGAAACTGAT
  AATCACCACT GTTCTTTTGA AATCCTGGAA AGGGCAAATC CTTTAGGAAG GGAGCATGGG
  K
  ATACAACAGA GAGGATATGC AAGGGCTGTT GGGTGTTTTT AAAGATTAGC TATACACAGA
  CTTGATAGTC CCAGCACAGC AGGAGGCTTA AGTCCTGAAG TCAGTGCTTG GACCTACATG
  GTCAGGTTGC AGGACGGAAG TATCCTGAGC TTACCATAGA GGAGTCGCTG TTGCACTGAG
  GAAGTGAAGA ACTCGGAATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49433150	NES12619231	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33021040					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49433150	NES12619231	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:30238443 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd2	catenin delta 2	Intron
D15Mit249	DNA Segment, Chr 15, Massachusetts Institute of Technology-249	1056 bp proximal