rs33021197 SNP Detail

Summary

• ID
  rs33021197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84926703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATG GAAATGTTGG GAGTGGTTGG
  R
  GAAAACTGCC CCGAGAGCAA TAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46224500	mCV24182200	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss145374878	ENSMUSSNP2196311	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss322748101	CHEV_8_86723973	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33021197					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84926703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20682	CpG island 20682	1262 bp distal
Cpgi20683	CpG island 20683	68 bp proximal
Gm26887	predicted gene, 26887	1350 bp upstream
Gm37352	predicted gene, 37352	795 bp upstream
Gm56830	predicted gene, 56830	1489 bp upstream
Gm56836	predicted gene, 56836	876 bp downstream
Gm64014	predicted gene, 64014	within coordinates
Gm64130	predicted gene, 64130	1063 bp downstream
Gm65345	predicted gene, 65345	870 bp upstream
Rr186982	regulatory region 186982	902 bp distal
Rr186983	regulatory region 186983	within coordinates
Tssr2624	transcription start site region 2624	1288 bp downstream
Tssr78372	transcription start site region 78372	761 bp upstream
Tssr78373	transcription start site region 78373	786 bp upstream
Tssr78374	transcription start site region 78374	857 bp upstream
Tssr78375	transcription start site region 78375	1692 bp upstream
Tssr82079	transcription start site region 82079	1710 bp upstream
Tssr82080	transcription start site region 82080	1680 bp upstream
Tssr82081	transcription start site region 82081	1651 bp upstream
Tssr82082	transcription start site region 82082	543 bp downstream
Tssr82083	transcription start site region 82083	656 bp downstream
Tssr82084	transcription start site region 82084	1550 bp downstream
Tssr82085	transcription start site region 82085	1887 bp downstream
Tssr82086	transcription start site region 82086	1909 bp downstream
Tssr82087	transcription start site region 82087	1938 bp downstream