rs33022293 SNP Detail

Summary

• ID
  rs33022293
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117011007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCCCAAAA GACCAGGGGA AATCTGGCTT TACTGGACTG
  GGCCCCTCAC TACAGCTGCA CAGTAGAGAT GAGTTTGCTC AGAGAGCAGG AAAAAAACCA
  K
  CCTCTCCAAA CACCTAGACA GCATACAGAT AGAACAGCAG ACACCTTTAT TACACTACAC
  ATGAGGCTCA TTTGCCTTTC CGGGCTTTGA TCTTCCGCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45726677	mCV22659083	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	T
ss147285179	ENSMUSSNP3916961	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33022293					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117011007 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	1547 bp proximal
Gm22980	predicted gene, 22980	283 bp downstream
Gm26330	predicted gene, 26330	1376 bp downstream
Rps8	ribosomal protein S8	26 bp downstream
Rr377051	regulatory region 377051	within coordinates
Rr598067	regulatory region 598067	1890 bp distal
Rr598068	regulatory region 598068	481 bp distal
Snord38a	small nucleolar RNA, C/D box 38A	706 bp downstream
Snord55	small nucleolar RNA, C/D box 55	1961 bp downstream
Tssr38607	transcription start site region 38607	16 bp upstream