rs33024378 SNP Detail

Summary

• ID
  rs33024378
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126156024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCGCTT CTGGAGCTGA
  TCTGCAGCAA CAGAAAACAG TTCGAAATAG GGACTTTCCA AGACCAGTCT GGGAGAGAGA
  AGAATTTGCA GAACATCACA GTGCCAGTCG TGGGGGAGGA AAATAAGGAC ACTCTGTGGA
  CAATGTAGGA CTACCACAAG GTGCGGATGC CACCTAGCGG CCATAATGGT GCAGCCACCC
  S
  GGCGCTGGTA GCATTCCGGA GCTGCAGCTC GAGCTGAATC ACGGGTGGGA CTTCCGGGTA
  GAACTGCCGG ATGCTGTAGT CTGACTTTGG TCAGCCGAAC CACAAGTCCC GGGGTCCTCT
  GCGCCACACC GCGCAGGCGC AGTGAGGAGG GGCCGGTCAG TCCTAGACGC TGAGGGGCCG
  CGGCTGGGTT GAATCGGCGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45727164	mCV22781782	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	G
ss147407597	ENSMUSSNP1482006	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33024378					SNP	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126156024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14813	CpG island 14813	within coordinates
Rr398488	regulatory region 398488	within coordinates
Rr599660	regulatory region 599660	1397 bp distal
Rr599661	regulatory region 599661	within coordinates
Rr599662	regulatory region 599662	16 bp distal
Rr599663	regulatory region 599663	105 bp proximal
Trappc3	trafficking protein particle complex 3	174 bp upstream
Tssr38986	transcription start site region 38986	1841 bp downstream
Tssr38987	transcription start site region 38987	138 bp upstream
Tssr38988	transcription start site region 38988	151 bp upstream